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ImageJ User Guide - IJ 1.46r | Tools
https://imagej.nih.gov/ij/docs/guide/146-19.html
To trace an object, either click inside near the right edge, or outside to the left of the object. To automatically outline and measure objects have a look, e.g., at the WandAutoMeasureTool macro. To visualize what happens, imagine a turtle that starts moving to the right from where you click looking for an edge.
ImageJ User Guide - IJ 1.46r | Analyze Menu
https://imagej.nih.gov/ij/docs/guide/146-30.html
When this option is enabled, ImageJ finds the extent of each particle by tracing the outer edge. When it is disabled, ImageJ finds the extent by flood filling. Record Starts This option allows plugins and macros to recreate particle outlines using the doWand(x,y) macro function.
Tracing Neurons using FIJI (ImageJ) - The Snyder Lab
http://snyderlab.com/2016/05/25/tracing-neurons-using-fiji-imagej/
You can save your unfinished traces and continue at a later time. To open a previously saved trace, Open FIJI app. Load the image file, split channels, start Simple Neurite Tracer (see “Starting with FIJI” instructions above) On your plug-in window: File > Load traces. And continue tracing where you left off.
TrackMate - ImageJ
https://imagej.net/plugins/trackmate/
How to write your own edge feature analyzer algorithm …
https://imagej.net/imagej-wiki-static/How_to_write_your_own_edge_feature_analyzer_algorithm_for_TrackMate
It has basic methods for the GUI integration: getKey () returns a unique string identifier that is used internally to reference the algorithm. For instance: "EDGE_VELOCITY_ANALYZER". getName () returns a string suitable to be displayed in the GUI …
Find Edges with ImageJ Programmatically - Stack Overflow
https://stackoverflow.com/questions/10652578/find-edges-with-imagej-programmatically
I want to use find edges option of the ImageJ, have the edges-found array and save it to another file programatically. ImagePlus ip1 = IJ.openImage ("myimage.jpg"); ImageProcessor ip = new ColorProcessor (ip1.getWidth (), ip1.getHeight ()); ip.findEdges (); However, the function findEdges is abstract and I can't have the edge-found image.
java - Find array of edges with imageJ - Stack Overflow
https://stackoverflow.com/questions/14170238/find-array-of-edges-with-imagej
As documented in §29.3 Find Edges, the command uses the Sobel operator.Each point of the final image is the magnitude of the gradient of the horizontal and vertical convolutions. A copy of the whole array is returned by the get*Array() methods of the chosen ImageProcessor; the individual elements of the array can be accessed using the various get*() …
Distance Analysis - ImageJ
https://imagej.github.io/imagej-wiki-static/Distance_Analysis
Distance Analysis (DiAna) This plugin allows : Calculating co-localization between objects in 3D. Measuring 3D distances between nearest object, co-localized or not. Getting some 3D measurements about each objects. The plugin can be used with labelled images, but it also integrates tools for the segmentation of the objects.
Can imageJ detect boundary of cell? - ResearchGate
https://www.researchgate.net/post/Can_imageJ_detect_boundary_of_cell
I am new to ImageJ and I need to quantify immunofluorescence intensity and distribution of protein in the image attached below. I think I …
MTrackJ: An ImageJ Plugin for Motion Tracking and …
https://imagescience.org/meijering/software/mtrackj/
MTrackJ is an ImageJ plugin to facilitate tracking of moving objects in image sequences and the measurement of track statistics. The plugin can handle up to five-dimensional (5D) images of any type supported by ImageJ. Download Information. Fiji users only need to enable the ImageScience update site to install MTrackJ.
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