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Simple Neurite Tracer - ImageJ
https://imagej.net/plugins/simple-neurite-tracer/
The Simple Neurite Tracer plugin was designed to allow easy semi-automatic tracing of neurons or other tube-like structures (e.g. blood vessels) through 3D image stacks. It has been replaced by the much more sophisticated SNT plugin.
NeuriteTracer: a novel ImageJ plugin for automated …
https://pubmed.ncbi.nlm.nih.gov/17936365/
NeuriteTracer: a novel ImageJ plugin for automated quantification of neurite outgrowth Abstract In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration.
Simple Neurite Tracer: Step-By-Step Instructions - ImageJ
https://imagej.net/imagej-wiki-static/Simple_Neurite_Tracer:_Step-By-Step_Instructions
These "step-by-step" instructions below assume that you have done the preliminary steps described on the Simple Neurite Tracer: Basic Instructions page including starting up the plugin and turning on "Hessian-based analysis". Note that the screenshots here are from an early pre-release version of the plugin. The path list in the current version is in a separate window, but …
NeuriteTracer: an ImageJ plugin for automated tracing of neurites
http://fournierlab.mcgill.ca/styled-6/NeuriteTracer.html
NeuriteTracer: an ImageJ plugin for automated tracing of neurites In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures.
SNT - ImageJ
https://imagej.net/plugins/snt/
Overview SNT is ImageJ’s framework for semi-automated tracing, visualization, quantitative analyses and modeling of neuronal morphology. For tracing, SNT supports modern multi-dimensional microscopy data, and highly-customizable routines.
Simple Neurite Tracer: 3D Interaction - ImageJ
https://imagej.net/imagej-wiki-static/Simple_Neurite_Tracer:_3D_Interaction
This is an archive of the old MediaWiki-based ImageJ wiki. ... Simple Neurite Tracer: 3D Interaction. This page is outdated and and likely irrelevant. The latest SNT documentation can be found here. It is now possible to select the points for …
SNT - ImageJ
https://imagej.net/imagej-wiki-static/Simple_Neurite_Tracer
3 Installation Overview SNT is ImageJ's framework for semi-automated tracing, visualization, quantitative analyses and modeling of neuronal morphology. For tracing, SNT supports modern multi-dimensional microscopy data, and highly-customizable routines.
Simple Neurite Tracer: Preprocessing Data for Better …
https://imagej.net/imagej-wiki-static/Simple_Neurite_Tracer:_Preprocessing_Data_for_Better_Results
When you start up Simple Neurite Tracer with "test.lsm" as the current image, it will offer to load the preprocessed image you have just generated. Preprocess Multiple Images The easiest way to preprocess multiple images is to record a macro for processing a single images, and then wrap it it in a loop to iterate over all the files in a directory.
Instructions for "Simple Neurite Tracer" PlugIn for ImageJ
https://www.longair.net/edinburgh/imagej/tracer/instructions.html
When starting the plugin from the Plugins -> tracing -> Simple Neurite Tracer menu option, you should be presented with a dialog like this: The three pane view gives you views of the image stack through XZ and ZY planes as well as the standard XY view. Some people find the three pane view confusing, and it takes up much more memory.
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