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MaSIV NeuriteTracer - File Exchange - MATLAB Central
https://www.mathworks.com/matlabcentral/fileexchange/62764-masiv-neuritetracer
MaSIV NeuriteTracer Overview Functions Reviews (1) Discussions (0) Navigate large (gigabytes) 3-D image stacks and trace axons or dendrites. This is a plugin for the free MATLAB-based large volume viewer, MaSIV. It adds to MaSIV the ability to manually trace an axon's neurites.
Simple Neurite Tracer - ImageJ
https://imagej.net/plugins/simple-neurite-tracer/
The Simple Neurite Tracer plugin was designed to allow easy semi-automatic tracing of neurons or other tube-like structures (e.g. blood vessels) through 3D image stacks. It has been replaced by the much more sophisticated SNT plugin.
GitHub - sgbasel/neuritetracker: Software for high …
https://github.com/sgbasel/neuritetracker
SainsburyWellcomeCentre/neuriteTracer: MaSIV neurite …
https://github.com/SainsburyWellcomeCentre/neuriteTracer
NeuriteTracer - McGill University
https://fournierlab.mcgill.ca/styled-6/NeuriteTracer.html
NeuriteTracer: an ImageJ plugin for automated tracing of neurites In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures.
NeuriteTracer: a novel ImageJ plugin for automated …
https://pubmed.ncbi.nlm.nih.gov/17936365/
The plugin analyzes fluorescence microscopy images of neurites and nuclei of dissociated cultured neurons. Given user-defined thresholds, the plugin counts neuronal nuclei, and traces and measures neurite length. We find that NeuriteTracer accurately measures neurite outgrowth from cerebellar, DRG and hippocampal neurons.
Ray tracing propagation model - MATLAB
https://www.mathworks.com/help/comm/ref/rfprop.raytracing.html
Create a ray tracing model. Use the image method and calculate paths with up to one reflection. Then, display the propagation paths. pm = propagationModel ( "raytracing", "Method", "image", ... "MaxNumReflections" ,1); raytrace (tx,rx,pm) For this ray tracing model, there is one propagation path from the transmitter to the receiver.
NeuriteTracer Manual - McGill University
http://fournierlab.mcgill.ca/resources/NeuriteTracer_Manual.pdf
an RGB merge with the detected nuclei. Open the merged images and check for tracing errors. Check for over and under tracing and for missing or false-positive nuclei. For over and under tracing, adjust the thresholds (lower for under-traced and higher for over-traced). For nuclear detection problems, adjust both the thresholds and the size ...
Design and Validation of a Tool for Neurite Tracing …
https://imagescience.org/meijering/publications/download/cyto2004.pdf
neurite tracing using our technique consists of (i) a detection phase, in which every individual pixel in the image is assigned a value indicating its likelihood of belonging to a neurite, and (ii) the actual tracing phase, in which consecutive pixels that are most likely to represent the centerlines of the neurites are linked together to …
Frontiers | Automated Neuron Tracing Using Content …
https://www.frontiersin.org/articles/10.3389/fnana.2021.712842/full
Open-Snake traced the neurites by adapting open-curve snake based on the combination of a gradient vector flow, neurite orientations, and a set of control rules ( Wang et al., 2011 ). neuTube applied a model-based algorithm for neuron tracing using the local geometrical and global structures of neurite ( Zhao et al., 2011; Feng et al., 2015 ).
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