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Neuron Tracing | MBF Bioscience
https://www.mbfbioscience.com/neuron-tracing
Neuron tracing tools: These ... and light sheet microscopes. Using multiple algorithms and a 3D interactive tracing environment, it can easily detect and trace structures automatically. It is compatible with different image modalities …
Automated Neuron Tracing Methods: An Updated Account
https://pubmed.ncbi.nlm.nih.gov/27447185/
This paper surveys the latest neuron tracing methods available in the scientific literature as well as a selection of significant older papers to better place these proposals into context. They are categorized into global processing, local processing and meta-algorithm approaches. Furthermore, we point out the algorithmic components used to ...
Neuron crawler: An automatic tracing algorithm for very …
https://ieeexplore.ieee.org/document/7164009
Automatic 3D neuron reconstruction for very large 3D light microscopy images remains to be a challenge in neuroscience. Few existing neuron tracing algorithms can be used with commonly available computers (laptops, desktops, or workstations) to efficiently and accurately reconstruct a neuron in image stacks that are tens of gigabytes or greater. We …
Automated Neuron Tracing Methods: An Updated Account
https://link.springer.com/article/10.1007/s12021-016-9310-0
Automatic 3D neuron tracing using all-path pruning
https://pubmed.ncbi.nlm.nih.gov/21685076/
Thus, a completely automatic approach for these hard situations is highly desirable. Results: We have developed an automatic graph algorithm, called the all-path pruning (APP), to trace the 3D structure of a neuron. To avoid potential mis-tracing of some parts of a neuron, an APP first produces an initial over-reconstruction, by tracing the ...
VR Neuron Tracing - Scientific Computing and …
http://sci.utah.edu/~will/papers/vrnt/vr-neuron-tracing.pdf
NeuroLucida 360 combines manual neuron tracing with automatic algorithms to provide semi-automatic extraction. The user places seed points for the algorithm by clicking or dragging along the neuron, and thereby guides the algorithm in selecting which data to process. This guided extraction improves the speed at which neuron morphology can
Neuron Crawler: An Automatic Tracing Algorithm for Very …
http://www.home.penglab.com/papersall/docpdf/2015_ISBI_neuroncrawler.pdf
tracing algorithm called Neuron Crawler , which works by first tracing a region of interest (e.g., around the soma) , and then iterative ly tracing in adjacent image tiles to grow the neuron structure in 3D to its termination point within the image . Our experimental result s sh ow that Neuron C raw ler can achieve ...
A turbo engine for tracing neurons - Allen Institute
https://alleninstitute.org/what-we-do/brain-science/news-press/articles/turbo-engine-tracing-neurons
April 28, 2017. Putting a turbo engine into an old car gives it an entirely new life—suddenly it can go further, faster. That same idea is now being applied to neuroscience, with a software wrapper that can be used on existing neuron tracing algorithms to boost their ability to handle not just big, but enormous sets of data. The wrapper ...
Improving the Usability of Virtual Reality Neuron Tracing …
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7891492/
Semi-automatic neuron tracing methods have been proposed to provide a compelling alternative to both manual and fully automatic neuron tracing [38, 43, 51, 52]. When using a semi-automatic method, the user provides coarse guidance to the algorithm, e.g., through a set of start and end points or clicks.
Algorithms - Allen Institute
https://alleninstitute.org/bigneuron/algorithms/
Source code examples of ported neuron tracing algorithms can be found in the Open Source Vaa3D tool hackathon folder. To find more information, send an email to [email protected]. Source codes, binary or libary based methods contributed to this project will follow the BigNeuron Method Contributor Agreement (see "Open Source Algorithms").
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