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Tracing Neurons using FIJI (ImageJ) - The Snyder Lab
http://snyderlab.com/2016/05/25/tracing-neurons-using-fiji-imagej/
NeuronJ - ImageJ
https://imagej.net/plugins/neuronj
NeuronJ is an ImageJ plugin to facilitate the tracing and analysis of elongated image structures, such as neuronal processes, complementing SNT.. NeuronJ features a friendly interface and a detailed online manual but can only be used to reconstruct 2D images and is not capable of SWC export, the most common format used in neuronal reconstructions. If you need to reconstruct …
NeuronJ: An ImageJ Plugin for Neurite Tracing and …
https://imagescience.org/meijering/software/neuronj/
SNT - ImageJ
https://imagej.net/plugins/snt/
NeuriteTracer: a novel ImageJ plugin for automated ...
https://pubmed.ncbi.nlm.nih.gov/17936365/
To automate these measurements, we have written NeuriteTracer, a neurite tracing plugin for the freely available image-processing program ImageJ. The plugin analyzes fluorescence microscopy images of neurites and nuclei of dissociated cultured neurons. Given user-defined thresholds, the plugin counts neuronal nuclei, and traces and measures ...
Classifying the tracing difficulty of 3D neuron image ...
https://pubmed.ncbi.nlm.nih.gov/34739611/
Quickly and accurately tracing neuronal morphologies in large-scale volumetric microscopy data is a very challenging task. Most automatic algorithms for tracing multi-neuron in a whole brain are designed under the Ultra-Tracer framework, which begins the tracing of a neuron from its soma and traces all signals via a block-by-block strategy.
Classifying the tracing difficulty of 3D neuron image ...
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8571474/
Introduction. Tracing morphologies of neurons is essential for investigating the structure and the function of neurons, exploring the working mechanism of the brain and studying the mechanism of brain diseases, such as neuron classification [], neuron morphology analysis [] and potential connectivity between brain circuits [].For small or medium scale volumetric light …
Classifying the tracing difficulty of 3D neuron image ...
https://braininformatics.springeropen.com/articles/10.1186/s40708-021-00146-0
Quickly and accurately tracing neuronal morphologies in large-scale volumetric microscopy data is a very challenging task. Most automatic algorithms for tracing multi-neuron in a whole brain are designed under the Ultra-Tracer framework, which begins the tracing of a neuron from its soma and traces all signals via a block-by-block strategy. Some neuron image …
How can I measure the speed of movement of neurons in …
https://www.researchgate.net/post/How_can_I_measure_the_speed_of_movement_of_neurons_in_a_migration_assay_using_imageJ
In this new frame, find the same neuron, and click the same part, and hit Ctrl+M again to obtain a second measurement. Repeat until you reach the end of the stack. You should end up with a …
AutoNeuriteJ: An ImageJ plugin for measurement and ...
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0234529
Some of plugins are neuron-based, allowing for the semi-automatic tracing of neurite extension (e.g. NeuronJ) [5, 6], or population-based, where whole neuritic lengths are measured with no neuron individualization or neuritic assignment ... We developed a new ImageJ macro able to measure neuron morphology in several neuronal culture conditions ...
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