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Automated Neuron Tracing Methods: An Updated Account
https://pubmed.ncbi.nlm.nih.gov/27447185/
Automated Neuron Tracing Methods: An Updated Account Abstract The reconstruction of neuron morphology allows to investigate how the brain works, which is one of the foremost challenges in neuroscience. This process aims at extracting the neuronal …
Neuron Tracing | MBF Bioscience
https://www.mbfbioscience.com/neuron-tracing
There are two general methods for tracing neurons. One popular method is to obtain images (2D or 3D) from a microscope and then use software that can import the image data and provide you with a set of tracing and segmentation …
A distance-field based automatic neuron tracing method
https://pubmed.ncbi.nlm.nih.gov/23497429/
This method first extracts the neurite signal (foreground) from a noisy image by using anisotropic filtering and automated thresholding. Then, DF-Tracing executes a coupled distance-field (DF) algorithm on the extracted foreground neurite signal and reconstructs the …
Automated Neuron Tracing Methods: An Updated …
https://link.springer.com/article/10.1007/s12021-016-9310-0
Improving the Usability of Virtual Reality Neuron Tracing ...
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7891492/
Semi-automatic neuron tracing methods have been proposed to provide a compelling alternative to both manual and fully automatic neuron tracing [ 38, 43, 51, 52 ]. When using a semi-automatic method, the user provides coarse guidance to the algorithm, e.g., through a set of start and end points or clicks.
Neuronal tracing - NEUROANATOMY
https://neuroanatomy.org/2003/002_005.pdf
Three different techniques are used to introduce tracer into the tissue: pressure injection, iontophoretic injection and the insertion of dye crystals [6]. PRESSURE INJECTIONS Injections require the tracer to be administered in liquid form.
Neuronal tracing - Wikipedia
https://en.wikipedia.org/wiki/Neuronal_tracing
Neuronal tracing, or neuron reconstruction is a technique used in neuroscience to determine the pathway of the neurites or neuronal processes, the axons and dendrites, of a neuron. From a sample preparation point of view, it may refer to some of the following as well as other genetic neuron labeling techniques,
FMST: an Automatic Neuron Tracing Method Based on …
https://link.springer.com/article/10.1007/s12021-018-9392-y
Active learning based neuron tracing consists of two main steps: initial tracing and branch merging (Gala et al. 2014 ). In the former, it uses the fast marching algorithm (Sethian 1999) initialized with multiple seed points to obtain an initial trace of the neurites.
Frontiers | A Student’s Guide to Neural Circuit Tracing ...
https://www.frontiersin.org/articles/10.3389/fnins.2019.00897/full
Tracers are categorized as anterograde or retrograde based on their direction of travel within neurons. Anterograde tracers (green) are taken up by neuronal cell bodies at the injection site and travel down the axon to terminal processes. Retrograde tracers (blue) are taken up by terminals and travel back to the cell body.
A Virtual Reality Visualization Tool for Neuron …
https://www.sci.utah.edu/publications/Ush2017c/vr-neuron-tracing-2.pdf
2.2 Neuron Tracing Workflow A typical neuron imaging and tracing workflow proceeds as follows. First, neurons and their processes are labeled using neuroanatomical tracing methods. Modern approaches to labeling neurons in large brains involve the use of viral vectors carrying the genes for fluorescent pro- teins [27].
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